STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccmFPutative cytochrome c-type biogenesis protein CcmF; COG: COG1138; Pfam: PF01578; InterPro: IPR002541. (822 aa)    
Predicted Functional Partners:
EFK58981.1
Hypothetical protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
 
 0.978
EFK55815.1
Tetratricopeptide repeat protein; InterPro: IPR011990.
 
 
 0.968
EFK58983.1
NADP oxidoreductase coenzyme F420-dependent; Pfam: PF03807.
       0.849
EFK59419.1
Cytochrome c assembly protein; COG: COG0755; Pfam: PF01578.
 
  
 0.847
ccmb
CcmB protein; Pfam: PF03379.
 
  
 0.833
EFK58532.1
Hypothetical protein.
  
     0.738
EFK58276.1
Hypothetical protein.
  
     0.637
EFK60077.1
Hypothetical protein.
  
     0.583
EFK55716.1
Tetratricopeptide repeat protein.
  
     0.543
EFK59620.1
ABC transporter, ATP-binding protein; COG: COG1131; Pfam: PF00005; InterPro: IPR003439.
 
     0.512
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.