STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK59041.1TonB-linked outer membrane protein, SusC/RagA family; Pfam: PF07715,PF00593; InterPro: IPR000531. (1126 aa)    
Predicted Functional Partners:
EFK59042.1
Hypothetical protein.
 
     0.945
EFK59044.1
Conserved hypothetical protein TIGR03982.
 
     0.851
EFK56239.1
Hypothetical protein.
 
     0.788
EFK58436.1
Hypothetical protein.
 
     0.786
EFK57920.1
Hypothetical protein.
  
     0.773
EFK57938.1
SusD family protein; Pfam: PF07980; InterPro: IPR012944.
  
     0.748
EFK59473.1
Hypothetical protein.
 
     0.746
EFK60104.1
Hypothetical protein.
  
     0.740
EFK58361.1
Hypothetical protein.
  
     0.736
EFK56977.1
SusD family protein; Pfam: PF07980; InterPro: IPR012944.
  
     0.736
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.