STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaDRhamnulose-1-phosphate aldolase/alcohol dehydrogenase; COG: COG3347; Pfam: PF00596,PF00106; InterPro: IPR013454. (702 aa)    
Predicted Functional Partners:
rhaI
Putative L-rhamnose catabolism isomerase; COG: COG4952; Pfam: PF01261; InterPro: IPR013022.
 
  
  0.974
EFK59081.1
Carbohydrate kinase, FGGY family protein; COG: COG1070; Pfam: PF00370; InterPro: IPR000577.
 
 
 0.973
EFK59084.1
L-rhamnose-proton symport protein (RhaT); COG: COG0697; Pfam: PF06379; InterPro: IPR010476.
 
     0.871
EFK59069.1
Transcriptional regulator, GntR family; Pfam: PF00392.
 
 
 0.861
EFK59381.1
Carbohydrate kinase, FGGY family protein; COG: COG1070; Pfam: PF00370,PF02782; InterPro: IPR000577.
  
 
 0.799
lldD
Dehydrogenase, FMN-dependent; COG: COG1304; Pfam: PF01070; InterPro: IPR013785.
 
 
 0.797
fadB
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein; COG: COG1250; Pfam: PF02737,PF00725,PF00378; InterPro: IPR016040.
  
 0.773
tktA2
Transketolase, C-terminal domain protein; COG: COG0022; Pfam: PF00676,PF02779,PF02780; InterPro: IPR001017.
   
 0.765
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
  
 0.757
gltB
Class II glutamine amidotransferase; COG: COG0069; Pfam: PF00310,PF04898,PF01645,PF01493; InterPro: IPR013785.
     
 0.736
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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