STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK58543.1Hypothetical protein. (418 aa)    
Predicted Functional Partners:
gspF
Bacterial type II secretion system domain protein F; COG: COG1459; Pfam: PF00482; InterPro: IPR001992.
 
   
 0.959
EFK58540.1
Hypothetical protein.
 
     0.951
EFK58542.1
MORN repeat protein; Pfam: PF07661.
 
     0.949
EFK58545.1
Prepilin-type cleavage/methylation N-terminal domain protein; Pfam: PF07963.
     
 0.850
EFK58544.1
Hypothetical protein.
       0.849
gspG
Prepilin-type cleavage/methylation N-terminal domain protein; Pfam: PF07963.
 
   
 0.804
gspD
Secretin and TonB N terminus short domain protein; Pfam: PF07660,PF00263; InterPro: IPR004846; Belongs to the bacterial secretin family.
 
   
 0.798
EFK58541.1
Hypothetical protein.
     
 0.797
gspE
Type II/IV secretion system protein; COG: COG2804; Pfam: PF00437; InterPro: IPR001482.
 
   
 0.767
EFK58195.1
RHS repeat-associated core domain protein; Pfam: PF05593.
  
     0.676
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.