STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK58612.1Hypothetical protein. (449 aa)    
Predicted Functional Partners:
EFK58611.1
FAD dependent oxidoreductase TIGR03364; Pfam: PF01266; InterPro: IPR006076.
 
     0.937
EFK58613.1
Putative phosphonatase-like hydrolase; Pfam: PF00702; InterPro: IPR005834.
 
     0.932
EFK57017.1
Putative phosphonatase-like hydrolase; Pfam: PF00702; InterPro: IPR005834.
 
     0.696
EFK58618.1
DNA-binding helix-turn-helix protein; COG: COG1396; Pfam: PF01381,PF07883; InterPro: IPR013096.
 
     0.667
EFK58614.1
SusD family protein; Pfam: PF07980; InterPro: IPR012944.
 
     0.606
EFK58615.1
TonB-linked outer membrane protein, SusC/RagA family; Pfam: PF07715,PF00593; InterPro: IPR012910.
 
     0.542
EFK57813.1
Metalloenzyme superfamily; Pfam: PF01676; InterPro: IPR001952.
  
     0.499
EFK57683.1
Hypothetical protein.
  
     0.406
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.