STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK58682.1Hypothetical protein; COG: COG2957; Pfam: PF04371; InterPro: IPR007466; 3.5.3.12; Belongs to the agmatine deiminase family. (350 aa)    
Predicted Functional Partners:
cpa
Putative N-carbamoylputrescine amidase; COG: COG0388; Pfam: PF00795; InterPro: IPR003010.
 
 0.969
speA
Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein; Pfam: PF02784,PF00278.
    
 0.700
EFK56356.1
Hydrolase, carbon-nitrogen family; COG: COG0388; Pfam: PF00795; InterPro: IPR003010.
 
 
 0.604
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.524
EFK58681.1
Transcriptional regulator, AraC family; Pfam: PF00165,PF06445; InterPro: IPR000005.
       0.475
EFK58683.1
Hypothetical protein.
       0.468
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.