STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK58715.1Hypothetical protein. (376 aa)    
Predicted Functional Partners:
EFK58714.1
Zinc finger domain protein, LSD1 subclass.
 
  
 0.970
EFK58716.1
Ser/Thr phosphatase family protein; COG: COG1407; Pfam: PF00149.
       0.538
lhr
DEAD/DEAH box helicase; COG: COG1201; Pfam: PF00270,PF00271,PF08494; InterPro: IPR014001.
       0.524
EFK59439.1
Hypothetical protein; Pfam: PF04536; InterPro: IPR007621.
  
  
 0.520
EFK59825.1
Hypothetical protein; COG: COG1512; Pfam: PF04536; InterPro: IPR007621.
  
  
 0.520
lig
ATP-dependent DNA ligase domain protein; COG: COG1793; Pfam: PF01068,PF04679; InterPro: IPR012310.
       0.516
EFK58719.1
Hypothetical protein; COG: COG1236.
       0.516
EFK55836.1
Conserved repeat protein; Pfam: PF01345.
  
     0.413
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.