STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK58748.1SusD family protein; Pfam: PF07980; InterPro: IPR012944. (528 aa)    
Predicted Functional Partners:
EFK58749.1
TonB-linked outer membrane protein, SusC/RagA family; Pfam: PF07715,PF00593; InterPro: IPR000531.
 
     0.946
EFK58360.1
TonB-linked outer membrane protein, SusC/RagA family; Pfam: PF07715,PF00593; InterPro: IPR000531.
  
 
   0.822
EFK59029.1
TonB-linked outer membrane protein, SusC/RagA family; Pfam: PF07715,PF00593; InterPro: IPR000531.
  
 
   0.811
EFK56187.1
TonB-linked outer membrane protein, SusC/RagA family; Pfam: PF00593; InterPro: IPR000531.
  
 
   0.797
EFK57718.1
TonB-linked outer membrane protein, SusC/RagA family; Pfam: PF07715,PF00593; InterPro: IPR000531; overlaps another CDS with the same product name.
  
 
   0.793
EFK58605.1
TonB-linked outer membrane protein, SusC/RagA family; Pfam: PF07715,PF00593; InterPro: IPR000531.
  
 
   0.775
EFK59391.1
TonB-linked outer membrane protein, SusC/RagA family; Pfam: PF07715,PF00593; InterPro: IPR012910.
  
     0.774
EFK57656.1
TonB-linked outer membrane protein, SusC/RagA family; Pfam: PF07715,PF00593; InterPro: IPR000531.
  
     0.774
EFK57638.1
TonB-linked outer membrane protein, SusC/RagA family; Pfam: PF07715,PF00593; InterPro: IPR000531.
  
 
   0.766
EFK59392.1
Hypothetical protein.
  
     0.765
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.