STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompHOuter membrane protein; Pfam: PF03938; InterPro: IPR005632. (177 aa)    
Predicted Functional Partners:
yaeT
Outer membrane protein assembly complex, YaeT protein; Pfam: PF07244,PF01103; InterPro: IPR010827.
 
  
 0.921
EFK58847.1
Outer membrane insertion signal domain protein.
 
 
 
 0.872
EFK58851.1
Outer membrane protein; Pfam: PF03938; InterPro: IPR005632.
 
     0.767
EFK57704.1
Hypothetical protein.
  
     0.747
EFK59390.1
Hypothetical protein.
  
     0.723
EFK59625.1
PglZ domain protein; COG: COG2204; Pfam: PF00072,PF08665; InterPro: IPR013973.
  
     0.723
EFK58380.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Pfam: PF00512,PF02518; InterPro: IPR003594.
  
     0.711
tpn
OmpA family protein; COG: COG2885; Pfam: PF07719,PF07676,PF00691; InterPro: IPR006665.
 
 
 0.704
EFK58080.1
Hypothetical protein.
  
     0.685
EFK58938.1
Hypothetical protein.
  
     0.673
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.