STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK58904.1Transglycosylase SLT domain protein; COG: COG0741; Pfam: PF01464; InterPro: IPR008258. (276 aa)    
Predicted Functional Partners:
EFK58531.1
Efflux ABC transporter, permease protein; Pfam: PF02687; InterPro: IPR003838.
  
     0.540
purL
Putative phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
 
   
 0.524
lepB
Signal peptidase I; COG: COG0681; Pfam: PF00717; InterPro: IPR011056; Belongs to the peptidase S26 family.
  
     0.511
lepB-2
Signal peptidase I; Pfam: PF00717; InterPro: IPR011056; Belongs to the peptidase S26 family.
  
     0.500
EFK56583.1
Efflux ABC transporter, permease protein; Pfam: PF02687; InterPro: IPR003838.
  
     0.480
rluB
Pseudouridylate synthase; COG: COG1187; Pfam: PF01479,PF00849; InterPro: IPR000748; Belongs to the pseudouridine synthase RsuA family.
  
    0.467
yaeT
Outer membrane protein assembly complex, YaeT protein; Pfam: PF07244,PF01103; InterPro: IPR010827.
  
     0.462
ccoN
Cytochrome c oxidase, cbb3-type, subunit I; COG: COG3278; Pfam: PF00115,PF02433; InterPro: IPR004677; Belongs to the heme-copper respiratory oxidase family.
       0.451
ccoP
Putative cytochrome c oxidase, cbb3-type, subunit III; COG: COG2010; Pfam: PF00034; InterPro: IPR009056.
       0.445
EFK58902.1
Hypothetical protein.
       0.445
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.