STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK58248.1Hypothetical protein; COG: COG2303; Pfam: PF01266. (571 aa)    
Predicted Functional Partners:
EFK58249.1
Hypothetical protein.
 
 0.956
EFK59403.1
WD domain, G-beta repeat protein; COG: COG2319; Pfam: PF00400; InterPro: IPR015943.
    
 0.858
EFK57270.1
Variant SH3 domain protein; Pfam: PF07653.
    
 0.858
cytA
COG: COG3258; Pfam: PF00034; InterPro: IPR009056.
 
 
 
 0.839
EFK55868.1
Tat pathway signal sequence domain protein.
 
 0.835
EFK56119.1
Tat pathway signal sequence domain protein.
 
 0.835
EFK57879.1
Hypothetical protein; Pfam: PF06439; InterPro: IPR010496.
 
     0.690
gdhB
COG: COG2133; Pfam: PF07995,PF00034; InterPro: IPR011042.
   
 
 0.660
EFK58135.1
Cytochrome C family protein; COG: COG2010; InterPro: IPR009056.
 
 
   0.658
EFK56147.1
Cytochrome C; Pfam: PF00034.
 
 
   0.653
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.