STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cat2Catalase; COG: COG0753; Pfam: PF00199; InterPro: IPR011614. (498 aa)    
Predicted Functional Partners:
otsB
Trehalose-phosphatase; COG: COG0380; Pfam: PF00982,PF02358; InterPro: IPR001830.
   
  
 0.913
icd
Isocitrate dehydrogenase, NADP-dependent; COG: COG0538; Pfam: PF00180; InterPro: IPR001804.
   
 0.721
EFK56134.1
MaoC-like protein; COG: COG2030; Pfam: PF01575; InterPro: IPR002539.
   
 0.720
prdX
Antioxidant, AhpC/TSA family; COG: COG0450; Pfam: PF00578; InterPro: IPR012335.
   
 
 0.662
tsaA
Antioxidant, AhpC/TSA family; COG: COG0450; Pfam: PF00578; InterPro: IPR012335.
   
 
 0.662
EFK58387.1
FAD linked oxidase, C-terminal domain protein; COG: COG0277; Pfam: PF01565,PF02913; InterPro: IPR004113.
   
 0.630
EFK56292.1
FAD binding domain protein; COG: COG0277; Pfam: PF01565,PF02913; InterPro: IPR004113.
   
 0.630
yhbO
Intracellular protease, PfpI family; COG: COG0693; Pfam: PF01965; InterPro: IPR006286.
  
 0.610
EFK57791.1
Intracellular protease, PfpI family; COG: COG0693; Pfam: PF01965; InterPro: IPR006286.
  
 0.610
hchA
DJ-1/PfpI family protein; COG: COG0693; Pfam: PF01965.
  
 0.610
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.