STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK58309.1Oxidoreductase, 2OG-Fe(II) oxygenase family protein; COG: COG3491; Pfam: PF03171; InterPro: IPR005123; Belongs to the iron/ascorbate-dependent oxidoreductase family. (320 aa)    
Predicted Functional Partners:
EFK58307.1
Sigma-70 region 2; Pfam: PF04542,PF08281; InterPro: IPR014284; Belongs to the sigma-70 factor family. ECF subfamily.
       0.482
EFK58308.1
Hypothetical protein.
       0.482
novC
Pyridine nucleotide-disulfide oxidoreductase; COG: COG2072; Pfam: PF01266.
   
 
 0.457
adhA
GroES-like protein; COG: COG1064; Pfam: PF08240,PF00107; InterPro: IPR002085.
   
 
 0.409
adh
GroES-like protein; COG: COG1064; Pfam: PF08240,PF00107; InterPro: IPR002085.
   
 
 0.409
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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