STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK58505.1Hypothetical protein. (305 aa)    
Predicted Functional Partners:
EFK58504.1
Hypothetical protein.
  
    0.793
EFK58503.1
Hypothetical protein.
       0.792
EFK58506.1
Membrane protein; Pfam: PF01944; InterPro: IPR002798.
       0.792
EFK58502.1
ATPase family associated with various cellular activities (AAA); COG: COG0714; Pfam: PF07726; InterPro: IPR011703.
  
    0.756
EFK58501.1
Hypothetical protein.
       0.747
EFK58500.1
Hypothetical protein; Pfam: PF01882; InterPro: IPR002881.
       0.617
EFK58507.1
RDD family protein; Pfam: PF06271; InterPro: IPR010432.
       0.601
gltB
Class II glutamine amidotransferase; COG: COG0069; Pfam: PF00310,PF04898,PF01645,PF01493; InterPro: IPR013785.
       0.457
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.