STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspDSecretin and TonB N terminus short domain protein; Pfam: PF07660,PF00263; InterPro: IPR004846; Belongs to the bacterial secretin family. (624 aa)    
Predicted Functional Partners:
gspG
Prepilin-type cleavage/methylation N-terminal domain protein; Pfam: PF07963.
 
  
 0.935
gspE
Type II/IV secretion system protein; COG: COG2804; Pfam: PF00437; InterPro: IPR001482.
 
  
 0.929
gspF
Bacterial type II secretion system domain protein F; COG: COG1459; Pfam: PF00482; InterPro: IPR001992.
 
  
 0.860
EFK58198.1
Hypothetical protein.
     
 0.850
EFK58540.1
Hypothetical protein.
 
    0.799
EFK58543.1
Hypothetical protein.
 
   
 0.798
EFK58542.1
MORN repeat protein; Pfam: PF07661.
 
     0.792
EFK58197.1
Hypothetical protein.
       0.773
EFK58195.1
RHS repeat-associated core domain protein; Pfam: PF05593.
 
    0.725
EFK58201.1
Hypothetical protein.
       0.688
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.