STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK57185.1Transcriptional regulator, BlaI/MecI/CopY family; Pfam: PF03965; InterPro: IPR005650. (123 aa)    
Predicted Functional Partners:
EFK57186.1
TonB-dependent receptor; Pfam: PF05569.
 
 
 0.956
EFK57279.1
Peptidase, M56 family; Pfam: PF05569.
 
 
 0.948
tonB3
Peptidase, M56 family; Pfam: PF05569,PF07715.
 
 
 0.893
EFK58943.1
Transcriptional regulator, BlaI/MecI/CopY family; Pfam: PF03965; InterPro: IPR005650.
  
  
 
0.768
EFK57278.1
Transcriptional regulator, BlaI/MecI/CopY family; Pfam: PF03965; InterPro: IPR005650.
  
  
 
0.578
yaeJ
peptidyl-tRNA hydrolase domain family protein; COG: COG1186.
       0.472
EFK60095.1
Copper-exporting ATPase; COG: COG2217; Pfam: PF00403,PF00122,PF00702; InterPro: IPR001757.
  
  
 0.463
actP
Copper-exporting ATPase; COG: COG2217; Pfam: PF00403,PF00122,PF00702; InterPro: IPR001757.
  
  
 0.463
actP2
Copper-exporting ATPase; COG: COG2217; Pfam: PF00122,PF00702; InterPro: IPR001757.
  
  
 0.463
EFK57183.1
Hypothetical protein; COG: COG4420; Pfam: PF06210; InterPro: IPR010406.
       0.414
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.