STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK57191.1GDSL-like protein; COG: COG2755; Pfam: PF00657; InterPro: IPR013831. (260 aa)    
Predicted Functional Partners:
EFK57201.1
Polygalacturonase (pectinase); COG: COG5434; Pfam: PF00295; InterPro: IPR012334; Belongs to the glycosyl hydrolase 28 family.
 
 0.990
yesX
FG-GAP repeat protein; Pfam: PF01839.
 0.979
EFK59076.1
Polygalacturonase (pectinase); COG: COG5434; Pfam: PF00295; InterPro: IPR012334; Belongs to the glycosyl hydrolase 28 family.
 
 0.975
EFK57202.1
Pectinesterase; COG: COG4677; Pfam: PF01095; InterPro: IPR012334.
  
 0.972
EFK59077.1
Polygalacturonase (pectinase); Pfam: PF00295; InterPro: IPR012334; Belongs to the glycosyl hydrolase 28 family.
 
 0.965
EFK57204.1
Pectinesterase; COG: COG4677; Pfam: PF01095; InterPro: IPR012334.
  
 0.921
EFK59402.1
Ricin-type beta-trefoil lectin domain protein; COG: COG5434; Pfam: PF00295,PF00652; InterPro: IPR012334; Belongs to the glycosyl hydrolase 28 family.
 
 0.914
EFK57205.1
Hypothetical protein; COG: COG0657; Pfam: PF07859; InterPro: IPR013094.
  
 0.912
EFK58301.1
Fibronectin type III domain protein; Pfam: PF00041; InterPro: IPR012334.
 
  
 0.894
pelA
Pectate lyase; InterPro: IPR012669.
 
  
 0.890
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.