STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK57350.1Hypothetical protein. (188 aa)    
Predicted Functional Partners:
EFK57349.1
Hypothetical protein.
       0.693
EFK57348.1
Hypothetical protein.
       0.679
secD
Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
    
 0.585
EFK59580.1
Hypothetical protein.
  
 
 0.537
EFK56425.1
Hypothetical protein.
  
 
 0.537
EFK56233.1
Regulator of chromosome condensation (RCC1); COG: COG5184; Pfam: PF00415; InterPro: IPR009091.
    
  0.478
EFK57351.1
Hypothetical protein.
       0.458
EFK57352.1
Hypothetical protein.
       0.458
EFK57353.1
Hypothetical protein.
       0.458
EFK57354.1
Hypothetical protein.
       0.458
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.