STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK57401.1Transcriptional regulator, AraC family; Pfam: PF00165; InterPro: IPR000005. (281 aa)    
Predicted Functional Partners:
EFK57402.1
Hypothetical protein; Pfam: PF05721.
 
     0.722
EFK59890.1
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165; InterPro: IPR000005.
  
     0.587
EFK58673.1
Transcriptional regulator, AraC family; Pfam: PF00165; InterPro: IPR000005.
  
     0.571
EFK59246.1
Transcriptional regulator, AraC family; Pfam: PF00165; InterPro: IPR000005.
  
     0.564
EFK58681.1
Transcriptional regulator, AraC family; Pfam: PF00165,PF06445; InterPro: IPR000005.
  
     0.549
EFK59242.1
Transcriptional regulator, AraC family; Pfam: PF00165; InterPro: IPR000005.
  
   0.544
gltB
Class II glutamine amidotransferase; COG: COG0069; Pfam: PF00310,PF04898,PF01645,PF01493; InterPro: IPR013785.
    
  0.529
EFK56471.1
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165; InterPro: IPR000005.
  
     0.525
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.489
EFK55833.1
Transcriptional regulator, AraC family; Pfam: PF00165; InterPro: IPR000005.
  
     0.474
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.