STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK57402.1Hypothetical protein; Pfam: PF05721. (308 aa)    
Predicted Functional Partners:
EFK57401.1
Transcriptional regulator, AraC family; Pfam: PF00165; InterPro: IPR000005.
 
     0.722
atoB2
acetyl-CoA C-acetyltransferase; COG: COG0183; Pfam: PF00108,PF02803; InterPro: IPR002155; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.555
atoB
acetyl-CoA C-acetyltransferase; COG: COG0183; Pfam: PF00108,PF02803; InterPro: IPR002155; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.555
pmi
Putative Mannose-6-phosphate isomerase; Pfam: PF01050.
    
 0.471
EFK57006.1
Hypothetical protein.
  
     0.449
EFK58387.1
FAD linked oxidase, C-terminal domain protein; COG: COG0277; Pfam: PF01565,PF02913; InterPro: IPR004113.
   
 0.436
EFK56292.1
FAD binding domain protein; COG: COG0277; Pfam: PF01565,PF02913; InterPro: IPR004113.
   
 0.436
EFK56628.1
AP endonuclease, family 2; Pfam: PF01261; InterPro: IPR012307.
 
     0.417
EFK59386.1
Creatinase; COG: COG0006; Pfam: PF01321,PF00557; InterPro: IPR000994.
    
 0.415
pepP
Peptidase, M24 family; COG: COG0006; Pfam: PF00557; InterPro: IPR000994.
    
 0.415
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.