STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK57404.1Hypothetical protein. (435 aa)    
Predicted Functional Partners:
lktB
ABC transporter, ATP-binding protein; COG: COG2274; Pfam: PF03412,PF00664,PF00005; InterPro: IPR001140.
 
 0.986
EFK57406.1
Hypothetical protein.
 
     0.914
EFK57403.1
Outer membrane efflux protein; Pfam: PF02321; InterPro: IPR003423.
  
  0.885
lktB2
ABC-type bacteriocin transporter; COG: COG2274; Pfam: PF03412,PF00664,PF00005; InterPro: IPR001140.
 
 0.854
EFK57407.1
RimK-like ATP-grasp domain protein; Pfam: PF08443.
 
     0.774
EFK57311.1
Outer membrane efflux protein; Pfam: PF02321.
  
  0.573
czcA-4
Heavy metal efflux pump, CzcA family; COG: COG3696; Pfam: PF00873,PF02321; InterPro: IPR004763; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.564
EFK59666.1
Interferon-induced transmembrane protein.
   
  0.512
EFK59713.1
Outer membrane efflux protein; Pfam: PF02321; InterPro: IPR003423.
   
  0.512
EFK58577.1
Outer membrane efflux protein; Pfam: PF02321; InterPro: IPR003423.
   
  0.512
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.