STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK57407.1RimK-like ATP-grasp domain protein; Pfam: PF08443. (300 aa)    
Predicted Functional Partners:
EFK57406.1
Hypothetical protein.
 
    0.922
EFK57404.1
Hypothetical protein.
 
     0.774
lktB
ABC transporter, ATP-binding protein; COG: COG2274; Pfam: PF03412,PF00664,PF00005; InterPro: IPR001140.
 
     0.760
gltB
Class II glutamine amidotransferase; COG: COG0069; Pfam: PF00310,PF04898,PF01645,PF01493; InterPro: IPR013785.
    
 0.627
EFK57408.1
Hypothetical protein.
       0.524
EFK57409.1
Hypothetical protein.
       0.496
EFK57403.1
Outer membrane efflux protein; Pfam: PF02321; InterPro: IPR003423.
       0.495
EFK57053.1
Carboxylate-amine ligase, YbdK family; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
    
 0.433
pepA
Cytosol aminopeptidase family, catalytic domain protein; COG: COG0260; Pfam: PF00883; InterPro: IPR011356; Belongs to the peptidase M17 family.
   
 
 0.426
ggt
Gamma-glutamyltransferase; COG: COG0405; Pfam: PF01019; InterPro: IPR000101.
     
 0.420
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.