STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK57489.1Phage/plasmid-related protein TIGR03299. (357 aa)    
Predicted Functional Partners:
EFK57494.1
PRTRC system protein E.
 
     0.884
EFK57495.1
PRTRC system protein C.
 
     0.876
ssb
Single-strand binding family protein; Pfam: PF00436; InterPro: IPR012340.
 
   
 0.866
EFK57497.1
PRTRC system protein B.
 
     0.862
EFK57498.1
PRTRC system ThiF family protein; Pfam: PF00899.
 
   
 0.862
EFK56965.1
Helicase C-terminal domain protein; COG: COG4646; Pfam: PF00271.
 
  
 0.690
EFK57553.1
Helicase C-terminal domain protein; COG: COG4646; Pfam: PF02384,PF00271.
 
  
 0.687
EFK57487.1
Hypothetical protein.
       0.631
EFK57490.1
Hypothetical protein.
       0.608
traM
Conjugative transposon TraM protein.
  
     0.589
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.