STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK57728.1Hypothetical protein. (198 aa)    
Predicted Functional Partners:
tpn
OmpA family protein; COG: COG2885; Pfam: PF07719,PF07676,PF00691; InterPro: IPR006665.
   
 
 0.577
rpmC
Ribosomal protein L29; Pfam: PF00831; InterPro: IPR001854; Belongs to the universal ribosomal protein uL29 family.
  
 
   0.518
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
    
 
 0.514
EFK57729.1
Hypothetical protein; COG: COG0628; Pfam: PF01594; InterPro: IPR002549.
       0.507
rplY
Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
  
   0.496
ompH
Outer membrane protein; Pfam: PF03938; InterPro: IPR005632.
    
 
 0.490
EFK58851.1
Outer membrane protein; Pfam: PF03938; InterPro: IPR005632.
    
 
 0.490
EFK56009.1
Outer membrane protein; Pfam: PF03938; InterPro: IPR005632.
    
 
 0.490
EFK55743.1
Outer membrane protein; Pfam: PF03938; InterPro: IPR005632.
    
 
 0.490
EFK59678.1
OmpA family protein; COG: COG2885; Pfam: PF05433,PF00691; InterPro: IPR006665.
  
   0.487
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.