STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK57767.1Putative membrane protein. (287 aa)    
Predicted Functional Partners:
EFK57768.1
Putative YigZ family protein; COG: COG1739; Pfam: PF01205; InterPro: IPR001498.
 
     0.868
udp
Phosphorylase family; COG: COG2820; Pfam: PF01048; InterPro: IPR000845.
       0.824
nucI
Nuclease-like protein; COG: COG1525; Pfam: PF00565; InterPro: IPR006021.
       0.776
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
    0.576
EFK58929.1
TonB family domain protein.
  
     0.544
EFK56563.1
Hypothetical protein.
  
     0.518
EFK56841.1
Hypothetical protein.
  
     0.463
EFK60045.1
Hypothetical protein.
  
     0.459
EFK56792.1
DNA-binding helix-turn-helix protein; Pfam: PF01381; InterPro: IPR001387.
  
     0.448
EFK59897.1
DNA-binding helix-turn-helix protein; Pfam: PF01381; InterPro: IPR001387.
  
     0.437
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.