STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK57803.1Histidine kinase; COG: COG3275; Pfam: PF06580; InterPro: IPR010559. (343 aa)    
Predicted Functional Partners:
EFK57804.1
Response regulator receiver domain protein; COG: COG3279; Pfam: PF00072,PF04397; InterPro: IPR001789.
 
  0.962
EFK57689.1
LytTr DNA-binding domain protein; COG: COG3279; Pfam: PF00072,PF04397; InterPro: IPR001789.
  
  0.883
EFK56718.1
Response regulator receiver domain protein; Pfam: PF00072,PF04397; InterPro: IPR001789.
  
  0.883
EFK55796.1
LytTr DNA-binding domain protein; COG: COG3279; Pfam: PF00072,PF04397; InterPro: IPR001789.
  
  0.883
EFK55856.1
Response regulator receiver domain protein; COG: COG3279; Pfam: PF00072; InterPro: IPR001789.
 
  0.842
EFK56641.1
Response regulator receiver domain protein; COG: COG3279; Pfam: PF00072,PF04397; InterPro: IPR001789.
 
  0.842
EFK56657.1
LytTr DNA-binding domain protein; COG: COG3279; Pfam: PF00072,PF04397; InterPro: IPR001789.
 
  0.842
EFK57819.1
Response regulator receiver domain protein; COG: COG3279; Pfam: PF00072,PF04397; InterPro: IPR001789.
 
  0.840
EFK59657.1
Response regulator receiver domain protein; Pfam: PF00072,PF04397; InterPro: IPR001789.
 
  0.839
lytT
LytTr DNA-binding domain protein; COG: COG3279; Pfam: PF00072,PF04397; InterPro: IPR001789.
 
  0.838
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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