STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK57840.1Auxiliary transport protein, membrane fusion protein (MFP) family protein; COG: COG1566; Pfam: PF00529; InterPro: IPR006143. (364 aa)    
Predicted Functional Partners:
EFK57839.1
Outer membrane efflux protein; Pfam: PF02321; InterPro: IPR003423.
 
  0.978
EFK57841.1
Drug resistance MFS transporter, drug:H+ antiporter-2 family; COG: COG0477; Pfam: PF07690; InterPro: IPR004638; Belongs to the major facilitator superfamily.
 
   0.970
EFK57838.1
Transcriptional regulator, TetR family; Pfam: PF00440; InterPro: IPR012287.
 
   
 0.903
lktB2
ABC-type bacteriocin transporter; COG: COG2274; Pfam: PF03412,PF00664,PF00005; InterPro: IPR001140.
  
 0.740
lktB
ABC transporter, ATP-binding protein; COG: COG2274; Pfam: PF03412,PF00664,PF00005; InterPro: IPR001140.
  
 0.740
EFK58138.1
Outer membrane efflux protein; Pfam: PF02321; InterPro: IPR003423.
 
  0.603
EFK56086.1
Transporter, major facilitator family protein; COG: COG0477; Pfam: PF07690; InterPro: IPR011701.
 
   0.599
EFK57688.1
Efflux transporter, outer membrane factor lipoprotein, NodT family; COG: COG1538; Pfam: PF02321; InterPro: IPR010131.
 
  0.598
hsrA
Transporter, major facilitator family protein; COG: COG0477; Pfam: PF07690; InterPro: IPR011701.
 
   0.591
EFK56462.1
Efflux transporter, outer membrane factor lipoprotein, NodT family; Pfam: PF02321; InterPro: IPR010131.
 
  0.591
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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