STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK57842.1TonB-dependent receptor; Pfam: PF07715,PF00593; InterPro: IPR000531. (957 aa)    
Predicted Functional Partners:
EFK59370.1
Hypothetical protein.
  
 
   0.634
EFK56644.1
Hypothetical protein.
  
     0.630
EFK59364.1
Hypothetical protein.
  
 
   0.564
EFK58636.1
Hypothetical protein.
  
     0.542
EFK58596.1
CAAX amino terminal protease family protein; Pfam: PF02517; InterPro: IPR003675.
  
     0.487
EFK59081.1
Carbohydrate kinase, FGGY family protein; COG: COG1070; Pfam: PF00370; InterPro: IPR000577.
  
     0.483
EFK59196.1
TonB family domain protein.
  
 
   0.482
EFK57683.1
Hypothetical protein.
  
 
   0.471
EFK59069.1
Transcriptional regulator, GntR family; Pfam: PF00392.
  
     0.462
EFK59358.1
Hypothetical protein.
  
 
   0.461
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.