STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK57891.1Bacterial surface protein 26-residue PARCEL repeat (3 repeats); COG: COG3210; Pfam: PF02415,PF03382; InterPro: IPR005046. (3807 aa)    
Predicted Functional Partners:
EFK57890.1
Bacteroidetes-specific putative membrane protein.
 
     0.599
EFK57892.1
Hypothetical protein.
       0.572
ftsK
FtsK/SpoIIIE family protein; COG: COG1674; Pfam: PF01580; InterPro: IPR002543.
    
   0.503
EFK56455.1
Hypothetical protein.
  
   0.496
EFK59604.1
Hypothetical protein.
  
   0.491
EFK56449.1
Peptidase, S41 family; Pfam: PF03572.
  
   0.477
EFK57243.1
Hypothetical protein.
  
    0.462
yesX
FG-GAP repeat protein; Pfam: PF01839.
  
 
  0.456
EFK59077.1
Polygalacturonase (pectinase); Pfam: PF00295; InterPro: IPR012334; Belongs to the glycosyl hydrolase 28 family.
  
 
  0.440
EFK57191.1
GDSL-like protein; COG: COG2755; Pfam: PF00657; InterPro: IPR013831.
    
  0.428
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.