STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK55873.1Outer membrane efflux protein; Pfam: PF02321. (456 aa)    
Predicted Functional Partners:
EFK55874.1
Efflux transporter, RND family, MFP subunit; Pfam: PF00529; InterPro: IPR006143; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.969
EFK55875.1
RND transporter, HAE1/HME family, permease protein; Pfam: PF00873; InterPro: IPR001036; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.961
EFK55872.1
Transcriptional regulator, TetR family; Pfam: PF00440; InterPro: IPR012287.
 
     0.930
EFK59713.1
Outer membrane efflux protein; Pfam: PF02321; InterPro: IPR003423.
  
  
  0.651
EFK58576.1
Efflux transporter, RND family, MFP subunit; COG: COG0845; Pfam: PF00364; InterPro: IPR006143; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.635
EFK56300.1
Outer membrane efflux protein; Pfam: PF02321; InterPro: IPR003423.
  
  
  0.592
EFK58738.1
Efflux transporter, RND family, MFP subunit; COG: COG0845; Pfam: PF00529; InterPro: IPR006143; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.583
acrA
Efflux transporter, RND family, MFP subunit; COG: COG0845; Pfam: PF00529; InterPro: IPR006143; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
  0.580
EFK57438.1
Conserved hypothetical protein TIGR03982; Pfam: PF00529; InterPro: IPR006143; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
  0.580
EFK56766.1
Efflux transporter, RND family, MFP subunit; Pfam: PF00529; InterPro: IPR006143; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
  0.580
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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