STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK56029.1Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165; InterPro: IPR000005. (291 aa)    
Predicted Functional Partners:
EFK56030.1
Hypothetical protein; COG: COG3324.
       0.732
EFK56049.1
Transcriptional regulator, AraC family; Pfam: PF00165; InterPro: IPR000005.
  
     0.731
EFK56028.1
Glyoxalase family protein; Pfam: PF00903.
       0.548
gltB
Class II glutamine amidotransferase; COG: COG0069; Pfam: PF00310,PF04898,PF01645,PF01493; InterPro: IPR013785.
    
  0.529
maeB
Putative phosphate acetyltransferase; COG: COG0281; Pfam: PF00390,PF03949,PF01515; InterPro: IPR002505.
  
  
  0.515
EFK59242.1
Transcriptional regulator, AraC family; Pfam: PF00165; InterPro: IPR000005.
  
   0.513
EFK56031.1
Hypothetical protein.
       0.497
EFK55833.1
Transcriptional regulator, AraC family; Pfam: PF00165; InterPro: IPR000005.
  
     0.491
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.489
EFK56635.1
Transcriptional regulator, AraC family; Pfam: PF00165; InterPro: IPR000005.
  
   0.484
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.