STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgoDMandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; COG: COG4948; Pfam: PF02746,PF01188; InterPro: IPR001354; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (392 aa)    
Predicted Functional Partners:
EFK56070.1
Hypothetical protein.
 
     0.905
EFK56069.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; COG: COG1028; Pfam: PF00106; InterPro: IPR016040.
 
  
 0.841
EFK56066.1
SMP-30/Gluconolaconase/LRE-like region; Pfam: PF01436,PF08450; InterPro: IPR011042.
 
  
 0.812
hemL-2
Putative glutamate-1-semialdehyde-2,1-aminomutase; COG: COG0001; Pfam: PF00202; InterPro: IPR005814; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.796
sglT
Transporter, SSS family; COG: COG4146; Pfam: PF00474; InterPro: IPR001734; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.736
EFK56724.1
Amidohydrolase family protein; COG: COG3618; Pfam: PF04909; InterPro: IPR006992.
 
  
 0.500
EFK56634.1
Hypothetical protein; COG: COG0684; InterPro: IPR005493.
 
 
 0.480
EFK56727.1
SAF domain protein; COG: COG2721; Pfam: PF08666,PF04295; InterPro: IPR007392.
 
  
 0.466
EFK57235.1
Kinase, PfkB family; COG: COG0524; Pfam: PF00294; InterPro: IPR011611.
 
  
 0.465
EFK57197.1
D-galactarate dehydratase/altronate hydrolase domain protein; COG: COG2721; Pfam: PF04295; InterPro: IPR007392.
 
  
 0.462
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.