STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK56157.1Hypothetical protein. (157 aa)    
Predicted Functional Partners:
EFK56156.1
Peptidase, M16 family; Pfam: PF00675,PF05193; InterPro: IPR011237; Belongs to the peptidase M16 family.
       0.809
EFK56155.1
Hypothetical protein.
       0.796
EFK56159.1
TonB-linked outer membrane protein, SusC/RagA family; Pfam: PF07660,PF07715,PF00593; InterPro: IPR012910.
       0.786
EFK56158.1
SusD family protein; Pfam: PF07980.
       0.782
EFK56160.1
Sigma factor regulatory protein, FecR/PupR family; Pfam: PF04773; InterPro: IPR006860.
       0.726
EFK56161.1
RNA polymerase sigma-70 factor; Pfam: PF04542,PF08281; InterPro: IPR014284; Belongs to the sigma-70 factor family. ECF subfamily.
       0.573
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.