STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK56164.1Transcriptional regulator, MarR family; Pfam: PF01047. (163 aa)    
Predicted Functional Partners:
ltaE
Beta-eliminating lyase; COG: COG2008; Pfam: PF01212; InterPro: IPR001597.
       0.773
EFK55823.1
Outer membrane protein, OMP85 family; Pfam: PF00149,PF01103.
  
     0.588
gltB
Class II glutamine amidotransferase; COG: COG0069; Pfam: PF00310,PF04898,PF01645,PF01493; InterPro: IPR013785.
     
 0.583
argG
Argininosuccinate synthase; COG: COG0137; Pfam: PF00764; InterPro: IPR001518; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 
 0.576
hisE
phosphoribosyl-ATP diphosphatase; COG: COG0139; Pfam: PF01502,PF01503; InterPro: IPR008179; In the N-terminal section; belongs to the PRA-CH family.
  
 
  0.540
EFK58618.1
DNA-binding helix-turn-helix protein; COG: COG1396; Pfam: PF01381,PF07883; InterPro: IPR013096.
  
 0.494
EFK55825.1
HD domain protein; Pfam: PF01966.
  
     0.491
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
  
 
 0.483
EFK60148.1
Hypothetical protein.
  
 
  0.481
argH
Argininosuccinate lyase; COG: COG0165; Pfam: PF00206; InterPro: IPR009049.
  
 
 0.478
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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