STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mntRIron dependent repressor DNA binding domain protein; COG: COG1321; Pfam: PF01325,PF02742; InterPro: IPR001367. (230 aa)    
Predicted Functional Partners:
metN
Putative D-methionine ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
    
   0.946
EFK56263.1
TonB-dependent receptor plug domain protein; Pfam: PF07715,PF00593; InterPro: IPR000531.
 
     0.653
gufA
Metal cation transporter, ZIP family; COG: COG0428; Pfam: PF02535; InterPro: IPR003689.
  
  
 0.651
EFK56264.1
Hypothetical protein.
     
 0.549
EFK56265.1
Hypothetical protein.
       0.534
EFK56266.1
Hypothetical protein.
       0.534
mntH
Putative bacteriochlorophyll 4-vinyl reductase; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.
 
  
 0.523
gltB
Class II glutamine amidotransferase; COG: COG0069; Pfam: PF00310,PF04898,PF01645,PF01493; InterPro: IPR013785.
       0.511
EFK56385.1
TIGR01777 family protein; COG: COG1090; Pfam: PF01370,PF08338; InterPro: IPR010099.
   
    0.470
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.453
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.