STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK56301.1Efflux transporter, RND family, MFP subunit; Pfam: PF00529; InterPro: IPR006143; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (455 aa)    
Predicted Functional Partners:
EFK56300.1
Outer membrane efflux protein; Pfam: PF02321; InterPro: IPR003423.
 
  0.938
EFK60082.1
Efflux ABC transporter, permease protein; COG: COG0577; Pfam: PF02687; InterPro: IPR003838.
 
  
 0.848
EFK59883.1
Efflux ABC transporter, permease protein; COG: COG0577; Pfam: PF02687; InterPro: IPR003838.
 
  
 0.847
EFK59228.1
ABC transporter, ATP-binding protein; COG: COG1136; Pfam: PF00005; InterPro: IPR003593.
 
 
 0.811
lktB2
ABC-type bacteriocin transporter; COG: COG2274; Pfam: PF03412,PF00664,PF00005; InterPro: IPR001140.
  
 0.740
lktB
ABC transporter, ATP-binding protein; COG: COG2274; Pfam: PF03412,PF00664,PF00005; InterPro: IPR001140.
  
 0.740
EFK56299.1
Polysaccharide deacetylase; COG: COG0726; Pfam: PF01522; InterPro: IPR002509.
 
     0.724
EFK59713.1
Outer membrane efflux protein; Pfam: PF02321; InterPro: IPR003423.
 
  0.713
EFK59893.1
Hypothetical protein.
  
     0.636
EFK58138.1
Outer membrane efflux protein; Pfam: PF02321; InterPro: IPR003423.
  
  0.618
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.