STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prtBProtease B family protein; Pfam: PF00413. (411 aa)    
Predicted Functional Partners:
EFK55822.1
Hypothetical protein.
 
     0.544
EFK59757.1
Plant Basic Secretory Protein; Pfam: PF04450; InterPro: IPR007541.
  
     0.481
EFK59760.1
TonB-linked outer membrane protein, SusC/RagA family; Pfam: PF07715,PF00593; InterPro: IPR012910.
  
     0.463
EFK57922.1
Hypothetical protein; Pfam: PF08522,PF02210; InterPro: IPR013728.
    
  0.447
EFK59759.1
SusD family protein; Pfam: PF07980; InterPro: IPR012944.
  
  
  0.446
EFK59060.1
SusD family protein; Pfam: PF07980; InterPro: IPR012944.
  
  
  0.445
EFK56684.1
Hypothetical protein.
  
     0.438
EFK57428.1
Hypothetical protein.
  
     0.421
EFK59805.1
Hypothetical protein.
  
     0.417
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.