STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK56401.1TonB-linked outer membrane protein, SusC/RagA family; Pfam: PF07715,PF00593; InterPro: IPR000531. (1031 aa)    
Predicted Functional Partners:
EFK56402.1
SusD family protein; Pfam: PF07980; InterPro: IPR012944.
 
 
   0.973
EFK56403.1
Alkaline phosphatase family protein; COG: COG1785; Pfam: PF00245; InterPro: IPR001952; Belongs to the alkaline phosphatase family.
 
     0.868
EFK58872.1
SusD family protein; Pfam: PF07980; InterPro: IPR012944.
  
 
   0.842
EFK59028.1
SusD family protein; Pfam: PF07980; InterPro: IPR012944.
  
 
   0.841
EFK56714.1
SusD family protein; Pfam: PF07980; InterPro: IPR012944.
  
 
   0.841
EFK56977.1
SusD family protein; Pfam: PF07980; InterPro: IPR012944.
  
 
   0.831
EFK57938.1
SusD family protein; Pfam: PF07980; InterPro: IPR012944.
  
 
   0.822
EFK58297.1
Hypothetical protein.
  
 
   0.804
EFK58359.1
SusD family protein; Pfam: PF07980; InterPro: IPR012944.
  
 
   0.801
EFK58296.1
SusD family protein; Pfam: PF07980; InterPro: IPR012944.
  
 
   0.800
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.