STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK56411.1DoxX family protein; Pfam: PF07681. (141 aa)    
Predicted Functional Partners:
EFK58836.1
Hypothetical protein.
 
     0.586
EFK57110.1
Hypothetical protein.
  
     0.489
EFK57111.1
Putative toxin-antitoxin system, toxin component; Pfam: PF08327.
  
     0.465
EFK57787.1
DinB family protein; Pfam: PF05163.
  
     0.449
EFK57112.1
Transcriptional regulator, ArsR family; COG: COG0640; Pfam: PF01022; InterPro: IPR011991.
 
     0.444
EFK56412.1
Hypothetical protein.
       0.420
EFK57106.1
Hypothetical protein.
  
     0.406
EFK56011.1
Hypothetical protein.
  
     0.403
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.