STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pccBCarboxyl transferase domain protein; COG: COG4799; Pfam: PF01039; InterPro: IPR000022. (535 aa)    
Predicted Functional Partners:
accC
acetyl-CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
 0.999
EFK56424.1
enoyl-CoA hydratase/isomerase family protein; COG: COG1024; Pfam: PF00378; InterPro: IPR001753.
 
 
 0.984
acdA
acyl-CoA dehydrogenase, C-terminal domain protein; COG: COG1960; Pfam: PF02771,PF02770,PF00441; InterPro: IPR013764.
 
 
 0.956
hmgcl
HMGL-like protein; COG: COG0119; Pfam: PF00682; InterPro: IPR013785.
 
 0.952
fadJ
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein; COG: COG1250; Pfam: PF00378,PF02737,PF00725; InterPro: IPR016040.
 
 
 0.921
EFK59819.1
biotin--[acetyl-CoA-carboxylase] ligase; Pfam: PF03099; InterPro: IPR004408.
 
 
 0.919
fadB
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein; COG: COG1250; Pfam: PF02737,PF00725,PF00378; InterPro: IPR016040.
  
 
 0.899
hppD
4-hydroxyphenylpyruvate dioxygenase; COG: COG3185; Pfam: PF00903; InterPro: IPR005956.
  
 
 0.896
bcd2
acyl-CoA dehydrogenase, C-terminal domain protein; COG: COG1960; Pfam: PF02771,PF02770,PF00441; InterPro: IPR013764.
 
 
 0.818
gcdH2
acyl-CoA dehydrogenase, C-terminal domain protein; COG: COG1960; Pfam: PF02771,PF02770,PF00441; InterPro: IPR013764.
 
 
 0.777
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.