STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK56426.1TonB-dependent receptor plug domain protein; Pfam: PF05738,PF07715,PF00593; InterPro: IPR000531. (838 aa)    
Predicted Functional Partners:
EFK56425.1
Hypothetical protein.
 
  
 0.927
EFK56427.1
Hypothetical protein.
 
   
 0.629
EFK56430.1
PepSY domain protein; Pfam: PF03929.
 
    0.606
EFK59582.1
Hypothetical protein.
  
     0.561
EFK59580.1
Hypothetical protein.
 
  
 0.527
EFK56429.1
Hypothetical protein.
 
     0.519
EFK57186.1
TonB-dependent receptor; Pfam: PF05569.
 
 
 
 0.499
EFK59767.1
Hypothetical protein.
  
 
   0.493
EFK59473.1
Hypothetical protein.
  
 
   0.456
EFK57263.1
Hypothetical protein.
  
     0.445
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.