STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK56429.1Hypothetical protein. (92 aa)    
Predicted Functional Partners:
EFK56430.1
PepSY domain protein; Pfam: PF03929.
 
     0.964
EFK56427.1
Hypothetical protein.
 
     0.863
EFK56428.1
Hypothetical protein.
       0.849
EFK56425.1
Hypothetical protein.
 
     0.689
EFK58453.1
Hypothetical protein.
  
     0.567
EFK56369.1
Hypothetical protein.
  
     0.536
EFK55936.1
Transposase; Pfam: PF01610; InterPro: IPR002560.
  
     0.525
EFK56426.1
TonB-dependent receptor plug domain protein; Pfam: PF05738,PF07715,PF00593; InterPro: IPR000531.
 
     0.519
EFK57868.1
Glyoxalase family protein; Pfam: PF00903.
  
     0.496
EFK58454.1
Kelch repeat protein; Pfam: PF01344; InterPro: IPR015915.
  
     0.462
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.