STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK56430.1PepSY domain protein; Pfam: PF03929. (541 aa)    
Predicted Functional Partners:
EFK56429.1
Hypothetical protein.
 
     0.964
EFK56427.1
Hypothetical protein.
 
    0.852
EFK56428.1
Hypothetical protein.
       0.849
EFK56425.1
Hypothetical protein.
 
    0.738
cysI
Nitrite/sulfite reductase ferredoxin domain protein; COG: COG0155; Pfam: PF03460,PF01077,PF05168; InterPro: IPR006067.
  
  
 0.635
EFK56426.1
TonB-dependent receptor plug domain protein; Pfam: PF05738,PF07715,PF00593; InterPro: IPR000531.
 
    0.606
EFK56369.1
Hypothetical protein.
  
     0.544
EFK58453.1
Hypothetical protein.
  
     0.511
EFK55936.1
Transposase; Pfam: PF01610; InterPro: IPR002560.
  
     0.495
EFK58454.1
Kelch repeat protein; Pfam: PF01344; InterPro: IPR015915.
  
     0.487
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.