STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK56454.1Hypothetical protein. (237 aa)    
Predicted Functional Partners:
EFK56456.1
TonB-dependent receptor plug domain protein; Pfam: PF07715,PF00593; InterPro: IPR000531.
 
     0.858
EFK56453.1
Hypothetical protein.
       0.795
EFK59603.1
TonB-dependent receptor plug domain protein; Pfam: PF07715,PF00593; InterPro: IPR000531.
 
     0.770
EFK56455.1
Hypothetical protein.
 
    
0.696
EFK58170.1
PKD domain protein; Pfam: PF00801.
  
     0.594
EFK56448.1
Heme oxygenase; Pfam: PF01126; InterPro: IPR016084.
 
     0.594
EFK59928.1
Hypothetical protein; InterPro: IPR001064.
  
     0.591
EFK56452.1
Hypothetical protein.
       0.584
plc2
Phosphatidylinositol diacylglycerol-lyase; Pfam: PF00388; InterPro: IPR000909.
  
     0.568
EFK57923.1
Putative endo-beta-N-acetylglucosaminidase F1; Pfam: PF08522; InterPro: IPR013781.
  
     0.528
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.