STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK56472.1TonB-dependent siderophore receptor; COG: COG1629; Pfam: PF07715,PF00593; InterPro: IPR000531. (791 aa)    
Predicted Functional Partners:
EFK57943.1
PepSY domain protein; Pfam: PF03929.
 
  
 0.666
EFK56471.1
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165; InterPro: IPR000005.
 
     0.622
EFK59583.1
PepSY domain protein; Pfam: PF03929.
 
  
 0.619
EFK57906.1
Sigma factor regulatory protein, FecR/PupR family; Pfam: PF04773; InterPro: IPR006860.
  
   0.605
EFK56404.1
PepSY domain protein; Pfam: PF03929.
 
  
 0.597
EFK57681.1
Sigma factor regulatory protein, FecR/PupR family; COG: COG3712; Pfam: PF04773; InterPro: IPR006860.
  
   0.539
EFK58403.1
Sigma factor regulatory protein, FecR/PupR family; COG: COG3712; Pfam: PF04773; InterPro: IPR006860.
  
   0.535
EFK57974.1
Sigma factor regulatory protein, FecR/PupR family; Pfam: PF04773; InterPro: IPR006860.
  
   0.532
EFK59224.1
Sigma factor regulatory protein, FecR/PupR family; Pfam: PF04773.
  
   0.530
EFK56160.1
Sigma factor regulatory protein, FecR/PupR family; Pfam: PF04773; InterPro: IPR006860.
  
   0.526
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.