STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK56533.1Acetyltransferase, GNAT family; Pfam: PF00583; InterPro: IPR016181. (177 aa)    
Predicted Functional Partners:
EFK57332.1
Bifunctional DNA primase/polymerase domain protein; Pfam: PF09250.
  
     0.726
EFK57361.1
Phage tail tape measure protein, TP901 family; InterPro: IPR010090.
 
     0.579
EFK56534.1
Hypothetical protein.
       0.551
EFK57336.1
Terminase small subunit; Pfam: PF03592; InterPro: IPR005335.
  
     0.530
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
  0.527
EFK56535.1
Hypothetical protein.
       0.515
EFK56536.1
Glyoxalase family protein; Pfam: PF00903.
       0.490
EFK56537.1
Hypothetical protein; Pfam: PF06520; InterPro: IPR010529.
       0.475
EFK56538.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; Pfam: PF00106; InterPro: IPR002198.
       0.432
EFK57529.1
Hypothetical protein.
  
     0.414
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.