STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nfnBNitroreductase family protein; COG: COG0778; Pfam: PF00881; InterPro: IPR000415. (199 aa)    
Predicted Functional Partners:
EFK56484.1
Nitroreductase family protein; COG: COG0778; Pfam: PF00881; InterPro: IPR000415.
  
  
 
0.842
opr
Oxidoreductase, FAD/FMN-binding protein; COG: COG1902; Pfam: PF00724; InterPro: IPR013785.
  
 
 0.600
thiF
ThiF family protein; COG: COG0476; Pfam: PF00899,PF05237; InterPro: IPR016040.
    
 0.573
ydzFA
Transcriptional regulator, HxlR family; COG: COG1733; Pfam: PF01638; InterPro: IPR002577.
       0.530
EFK56962.1
ABC-2 type transporter; Pfam: PF01061; InterPro: IPR013525.
  
  
 0.494
EFK56963.1
ABC-2 type transporter; Pfam: PF01061; InterPro: IPR013525.
  
  
 0.494
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
 
 0.490
EFK59451.1
Hypothetical protein; COG: COG1853; InterPro: IPR012349.
  
 
 0.461
EFK56571.1
DGPF domain protein; Pfam: PF04946.
       0.440
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
     
 0.417
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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