STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK56632.1Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; COG: COG4948; Pfam: PF02746,PF01188; InterPro: IPR001354; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (388 aa)    
Predicted Functional Partners:
dhrS
Oxidoreductase, short chain dehydrogenase/reductase family protein; COG: COG1028; Pfam: PF00106; InterPro: IPR016040.
 
  
 0.875
EFK56634.1
Hypothetical protein; COG: COG0684; InterPro: IPR005493.
 
 
 0.854
EFK56633.1
Glycosyl hydrolase family 2, sugar binding domain protein; Pfam: PF02837,PF00703,PF02836; InterPro: IPR013781.
 
     0.698
EFK56066.1
SMP-30/Gluconolaconase/LRE-like region; Pfam: PF01436,PF08450; InterPro: IPR011042.
 
  
 0.578
EFK57197.1
D-galactarate dehydratase/altronate hydrolase domain protein; COG: COG2721; Pfam: PF04295; InterPro: IPR007392.
 
  
 0.470
EFK56727.1
SAF domain protein; COG: COG2721; Pfam: PF08666,PF04295; InterPro: IPR007392.
 
  
 0.468
EFK57195.1
Kinase, PfkB family; COG: COG0524; Pfam: PF00294; InterPro: IPR011611.
 
  
 0.450
EFK57235.1
Kinase, PfkB family; COG: COG0524; Pfam: PF00294; InterPro: IPR011611.
 
  
 0.450
uxuB
Mannitol dehydrogenase domain protein; COG: COG0246; Pfam: PF01232,PF08125; InterPro: IPR016040; Belongs to the mannitol dehydrogenase family.
 
  
 0.417
EFK56629.1
Tat pathway signal sequence domain protein; Pfam: PF07394; InterPro: IPR010869.
       0.417
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.