STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
catBacterial transferase hexapeptide repeat protein; COG: COG0110; Pfam: PF00132. (210 aa)    
Predicted Functional Partners:
lacA
Bacterial transferase hexapeptide repeat protein; COG: COG0110; Pfam: PF00132.
  
     0.591
EFK58969.1
Glycosyltransferase, group 1 family protein; Pfam: PF00534.
  
  
 0.559
serA2
HAD phosphoserine phosphatase-like hydrolase, family IB; COG: COG0111.
    
 0.522
EFK56677.1
Hypothetical protein.
       0.482
pglE
DegT/DnrJ/EryC1/StrS aminotransferase family protein; COG: COG0399; Pfam: PF01041; InterPro: IPR000653; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.460
EFK59774.1
Hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.453
EFK59748.1
Chain length determinant protein; COG: COG0489; Pfam: PF02706.
  
  
 0.427
cysE
Putative serine O-acetyltransferase; COG: COG1045; Pfam: PF00132.
  
 
 0.400
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.