STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK56863.1Transcriptional regulator, GntR family; COG: COG1167; Pfam: PF00392,PF00155; InterPro: IPR015421. (472 aa)    
Predicted Functional Partners:
EFK56864.1
Cupin domain protein; Pfam: PF07883; InterPro: IPR014710.
 
     0.740
EFK56865.1
Putative dihydrodipicolinate synthase; COG: COG0329; Pfam: PF00701; InterPro: IPR002220; Belongs to the DapA family.
 
     0.538
EFK56862.1
Hypothetical protein; COG: COG3876; Pfam: PF07075; InterPro: IPR008302.
       0.527
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.